After replacing the engine, it will not stay running?

This sounds like you have a vacuum leak or the idle speed actuator is not working or unplugged. Please go over this guide to help us fix the problem:

https://www.2carpros.com/articles/stall-at-idle

Here is the location of the idle speed actuator so you can check it out. Check out the images (below). Please upload pictures or videos in your response of any problems so we can see what to help you with.

So, it cranks over but the engine shakes when trying to start it still won’t stay on.

Does it run are just crank over? and if it runs can you drive it with hooding your foot one the throttle sightly? Can you please upload a short video of what you are talking about so I can see whats going on?

This is how it sounds trying to turn on the car the first 2 or 3 tries. Then the car will stay on but as soon as I step on the gas pedal the car shuts off. I have replaced the throttle body and crankshaft sensor.

Thanks for the video. The engine is hurt, either the timing belt has jumped or the engine has overheated. I would remove the spark plugs and do a compression tests which you can rent get the kit from the auto parts store for free in most cases.

Here is a guide to help you with the test.:

https://www.2carpros.com/articles/how-to-test-engine-compression

My bet is the timing belt because of the codes. Please go over this guide and get back to us.